HPCVG Publications and Presentations

Here is a list of publications and presentations written or co-authored by staff of the High Performance Computing and Visualzation Group of the Applied and Computational Mathematics Division of NIST.

2015

• S. Satterfield, J. Terrill, J. Hagedorn, W. Griffin, W. George, Immersive Virtual Measurement Techniques at NIST, Birds of a Feather Session: Immersive Visualization for Science and Research International, SIGGRAPH 2015 Conference, August 10, 2015. Click here for a 9 minute movie that includes all slides, movie clips and audio narration presented. 

• S. Satterfield, J. Terrill, J. Hagedorn, W. Griffin, W. George, Immersive Virtual Measurement Techniques at NIST, Birds of a Feather Session: OpenScenegraph, SIGGRAPH 2015 Conference, August 12, 2015. Click here for a 9 minute movie that includes all slides, movie clips and audio narration presented.

• S. Satterfield, N. Martys, W. George, J. Hagedorn, J. Terrill, Suspension Flow in Pipe Systems: Comparison of Newtonian and Shear Thinning Fluids, SC15, The International Conference for High Performance Computing, Networking, Storage and Analysis, November 15-20, 2015. Click here for the 8 minute movie that was presented in the NIST booth during the conference exhibition, Nov 16-19. Also, click here for a behind the scenes look at the making of the movie.
   
• Under construction.

2014

• W. Griffin, D. Catacora, S. Satterfield, J. Bullard, J. Terrill, Debugging Cement Hydration Numerical Simulations Using D3.js and a CAVE, NIST ITL Science Day, October 1, 2014.

• Under construction.

2013

• Under construction.

2012

• Under construction.

2011

• W.-B. Yang, K. Sayrafian-Pour, J. Hagedorn, J. Terrill, K. Y. Yazdandoost, A. Taparugssanagorn, M. Hamalainen, J. Iinatti, Impact of an Aortic Valve Implant on Body Surface UWB Propagation: A Preliminary Study, The Fifth International Symposium on Medical Information and Communication Technology (ISMICT), March 27-31, 2011.

• K. Sayrafian-Pour, W. B. Yang, J. Hagedorn, J. Terrill, K. Y. Yazdandoost, K. Hamaguchi, Channel Models for Medical Implant Communication, International Journal of Wireless Information Networks, 17(3-4), December 2010, pp. 105-112.

• J.W. Bullard, E.J. Garboczi, W.L. George, N.S. Martys, S.G. Satterfield, J.E. Terrill, Advancing the Materials Science of Concrete with Supercomputers, Concrete International, Vol 33, no. 1, Jan 2011, pp. 24-29.

• J. S. Sims and S. A. Hagstrom, Hylleraas-configuration-interaction study of the 1S ground state of neutral beryllium, Physical Review A, 83, 2011. ID: 032518.
  Note: DOI: 10.1103/PhysRevA.83.032518

• Peskin, A.P., Hoeppner, D.J., Stuelten, C.H., Segmentation and Cell Tracking of Breast Cancer Cells, 7th International Symposium on Visual Computing, Sept. 26-28, 2011.

• Alden A. Dima, John T. Elliott, James J. Filliben, Michael Halter, Adele Peskin, Javier Bernal, Benjamin L. Stottrup, Marcin Kociolek, Mary C. Brady, Hai C. Tang, and Anne L. Plant: Comparison of segmentation algorithms for fluorescence microscopy images of cells. Cytometry Part A, 79A: 545-559, 2011. 

• Zachary H.Levine, Benjamin R.Galloway, Adele P.Peskin,
  RECIST Applied to Realistic Tumor Models, J. Res. Natl. Inst. Stand. Technol. 116, 685-688 (2011).

2010

• E. Garboczi, J. Bullard, N. Martys and J. Terrill, The Virtual Cement and Concrete Testing Laboratory: Performance Prediction, Sustainability, and the CSHub in NRMCA Concrete Sustainability Conference, Tempe, AZ, April 2010.

• Nicos S. Martys, William L. George, Byong-Wa Chun, Didier Lootens, A Smoothed Particle Hydrodynamics Based Fluid Model with a Spatially Dependent Viscosity: Application to flow of a suspension with a non-Newtonian fluid matrix, Rheologica Acta, Volume 49, no. 10, 2010 (Oct 2010).
  Note:DOI 10.1007/s00397-010-0480-7, online at http://dx.doi.org/10.1007/s00397-010-0480-7.

• J. Bullard, E. Enjolras, W. George, S. Satterfield and J. Terrill, A Parallel Reaction-Transport Model Applied to Cement Hydration and Microstructure Development, Modelling and Simulation in Materials Science and Engineering, 18, 2010. ID: 025007.
  Note: Modelling Simul. Mater. Sci. Eng. 18 (2010) 025007 (16pp) doi:10.1088/0965-0393/18/2/025007

• G. Bryant, M. Zielinski, N. Malkova, J. Sims, W. Jaskolski and J. Aizpurua, Effect of Mechanical Strain on the Optical Properties of Quantum Dots: Controlling Exciton Shape, Orientation, and Phase with a Mechanical Strain, Physical Review Letters, 105(6), 2010. ID: 067404.
  Note: Pages 067404-1 to 067404-1=4 DOI: 10.1103/PhysRevLett.105.067404

• D. Bannerjee, J. Gross, P. Reddy Gaddam, M. Olano, W. Hess, J. Terrill, T. Griffin, J. Hagedorn, J. Kelso and S. Satterfield, An Integrated Interactive Visualization and Analysis Environment to study the Impact of Fire on Building Structures in SIGGRAPH 2010, Los Angeles, CA, July 2010.

• J. Chalfoun, A. Dima, A. Peskin, J. Elliot and J. Filliben, A Human Inspired Local Ratio-Based Algorithm for Edge Detection in Fluorescent Cell Images in The 6th International Symposium on Visual Computing 2010, Las Vegas, NV., November-December 2010.

• A. Peskin, A. Dima, J. Chalfoun and J. Elliot, Predicting Segmentation Accuracy for Biological Cell Images in The 6th International Symposium on Visual Computing 2010, Las Vegas, NV., November-December 2010.

• A. Peskin and A. Dima, Modeling Clinical Tumors to Create Reference Data for Tumor Volume Measurement in The 6th International Symposium on Visual Computing 2010, Las Vegas, NV., November-December 2010.

• A. Peskin, A. Dima, J. Chalfoun and J. Filliben, Accuracy in Fluorescent Cell Image Segmentation Algorithms in IBIS-2010 The International Symposium on Business and Industrial Statistics, Portoroz, Slovenia, July 2010.

• A. Peskin, A. Dima, J. Chalfoun and J. Elliot, Predicting Segmentation Accuracy for Biological Cell Images in Bioimage Informatics 2010, Pittsburgh, PA, September 2010.

2009

• K. Sayrafian-Pour, W. Yang, J. Hagedorn, J. Terrill and K. Y. Yazdandoost, A Statistical Path Loss Model for Medical Implant Communication Channels in IEEE 2009 Personal, Indoor, and Mobile Radio Communications Symposium, September 2009.
  Note: Received Best Paper Award.

• A. Peskin, K. Kafadar, A. M. Santos and G. Haemer, Robust Volume Calculations of Tumors of Various Sizes in 2009 International Conference on Image Processing, Computer Vision, and Pattern Recognition, Las Vegas, NV, July 2009. 

• A. Peskin, K. Kafadar, A. Dima, J. Bernal and D. Gilsinn, Synthetic Lung Tumor Data Sets for Comparison of Volumetric Algorithms in 2009 International Conference on Image Processing, Computer Vision, and Pattern Recognition, Las Vegas, NV, July 2009.

• A. Peskin, K. Kafadar and A. Dima, A Quality Pre-Processor for Biological Cell Images in Computational Bioimaging 2009, 5th International Symposium on Visual Computing, Las Vegas, NV, November-December 2009. 

• G. Bryant, N. Malkova, J. Sims, M. Zielinski, W. Jaskolski and J. Aizpurua, Re-engineering the Optics of Quantum Dots with Mechanical Strain in Optics of Excitons in Confined Systems (OECS11), Madrid, Spain, September 2009.

• G. Bryant, N. Malkova, J. Sims, M. Zielinski, W. Jaskolski and J. Aizpurua, Re-engineering the Optics of Quantum Dots with Mechanical Strain in Electronic Materials Conference, University Park, PA, June 2009.

• D. Bannerjee, J. Gross, W. Hess, M. Olano and J. Terrill, Visualization of Structural Behavior under Fire, National Institute of Standards and Technology, NISTIR 7619, August 2009.

• J. Terrill, W. L. George, T. J. Griffin, J. Hagedorn, J. T. Kelso, M. Olano, A. Peskin, S. Satterfield, J. S. Sims, J. W. Bullard, J. Dunkers, N. S. Martys, A. O'Gallagher and G. Haemer, Extending Measurement Science to Interactive Visualization Environments, in Trends in Interactive Visualization: A-State-of-the-Art Survey, E. Zudilova-Seinstra, T. Adriaansen and R. Van Liere (Ed.), Springer, U.K., 2009.
  Note: Pages: 207-302

• K. Y. Yazdandoost and K. Sayrafian-Pour, Channel Model for Body Area Network (BAN), April 2009, Report to the IEEE P802.15. ID: IEEE 802.15-08-0780-02-0006.
  Note: J. Hagedorn, J. Terrill, and W. Yang listed as contributors.

• N. Martys, D. Lootens, W. L. George and P. Hebraud, Contact and Stress Anisotropies in Start-Up Flow of Colloidal Suspensions, Physical Review E, 80, 2009. ID: 031401.
  Note: Phys. Rev. E, 80, 031401, 7 pages, (2009)

• N. S. Martys,W. George, S. Satterfield, D. Lootens, H. Pascal, and J. Hagedorn, A Smoothed-Particle-Hydrodynamics-Based Fluid Model with a Local Shear-Rate Dependent Viscosity: Application to Flow of a Suspension with a Non-Newtonian Fluid Matrix, presented at The 81st Annual Meeting of The Society of Rheology, October 2009.

• J. S. Sims and S. A. Hagstrom, Hy-CI Study of the 2 2S Ground State of Neutral Lithium and the First Five Excited 2S States, Physical Review A, 80, 2009. ID: 052507.
  Note: DOI: 10.1103/PhysRevA.80.052507

• Z. Levine, M. Li, A. P. Reeves, D. F. Yankelvitz, J. J. Chen, E. L. siegel, A. Peskin and D. N. Zeiger, A Low-Cost Density Reference Phantom for Computed Tomography, Medical Physics, 36, 2009, pp. 286-288.

2008

• J. Hagedorn, J. Terrill, W. Yang, K. Sayrafian-Pour, K. Y. Yazdandoost and R. Kohno, A Statistical Path Loss Model for MICS, Report to the IEEE P802.15, September 2008. ID: IEEE 802.15-08-0519-01-0006.

• N. S. Martys, D. Lootens, W. L. George, S. Satterfield and P.Hebraud, Spatial-Temporal Correlations at the Onset of Flow in Concentrated Suspensions in The 15th International Congress on Rheology, Monterey, CA, August 2008.

• N. S. Martys, D. Lootens, W. L. George, S. Satterfield and P.Hebraud, Stress Chains Formation Under Shear of Concentrated Suspension in The 15th International Congress on Rheology, Monterey, CA, August 2008.

• J. G. Hagedorn, J. E. Terrill, A. P. Peskin and J. J. Filliben, Methods for Quantifying and Characterizing Errors in Pixel-Based 3D Rendering, Journal of Research of NIST, 113(4), July-August 2008, pp. 221-238.

• J. Hagedorn, J. Terrill, W. Yang, K. Sayrafian-Pour, K. Y. Yazdandoost and R. Kohno, MICS Channel Characteristic: Preliminary Results, Report to the IEEE P802.15, May 2008. ID: IEEE 802.15-08-0351-00-0006.

• J. S. Sims, W. L. George, T. J. Griffin, J. G. Hagedorn, H. K. Hung, J. T. Kelso, M. Olano, A. P. Peskin, S. G. Satterfield, J. Devaney Terrill, G. W. Bryant and J. G. Diaz, Accelerating Scientific Discovery Through Computation and Visualization III. Tight-Binding Wave Functions for Quantum Dots, Journal of Research of NIST, 113(3), May-June 2008, pp. 131-142.

2007

• J. Hagedorn, J. Dunkers, S. Satterfield, A. Peskin, J. Kelso and J. Terrill, Measurement Tools for the Immersive Visualization Environment: Steps Toward the Virtual Laboratory, Journal of Research of NIST, 112 (5), September-October 2007, pp. 257-270.

• J. S. Sims and S. A. Hagstrom, Math and Computational Science Issues in High-Precision Hy-CI Calculations II. Kinetic Energy and Electron-Nucleus Interaction Integrals, Journal of Physics B: Atomic, Molecular, and Optical Physics, 40, 2007, pp. 1575-1587.

• Z. H. Levine, A. Volkovitsky and H. K. Hung, Alignment of Fiducial Marks in a Tomographic Tilt Series with an Unknown Rotation Axis, Computer Physics Communications, 176, April 2007, pp. 694-700.

• N. S. Martys, C. F. Ferraris, V. Gupta, J.H. Cheung, J. G. Hagedorn, A. P. Peskin and E. J. Garboczi, Computational Model Predictions of Suspension Rheology: Comparison to Experiment in The 12th International Conference on the Chemistry of Cement, Montreal, Canada, July 2007.

• J. G. Hagedorn, S. G. Satterfield, J. T. Kelso, W. Austin, A. P. Peskin and J. E. Terrill, Correction of Location and Orientation Errors in Electromagnetic Motion Tracking, Presence, 16(4), August 2007, pp. 352-366.

• G. Bryant, M. Zielinski, W. Jaskolski, J. Aizpurua and J. Sims, Controlling the Optical Properties of Self-Assembled Quantum Dots Using External Strain delivered at The Materials Research Society Fall Meeting, Boston, MA, November 2007.

2006

•  J. Hagedorn, J. Dunkers, A. Peskin, J. Kelso and J. Terrill, Quantitative, Interactive Measurement of Tissue Engineering Scaffold Structure in an Immersive Visualization Environment, Biomaterials Forum, 28, 2006, pp. 6-9 and cover.

• H. Hung, Visualization of a Quantum Dot, National Geographic Online Edition, June 2006.

• J. Sims, G. Bryant and H. Hung, Excitons in Negative Band Gap Nanocrystals delivered at American Physics Society March Meeting, Baltimore, MD, March 2006.

• J. S. Sims and S. A. Hagstrom, High Precision Variational Born-Oppenheimer Energies of the Ground State of the Hydrogen Molecule Journal of Chemical Physics, 124 (9), 2006, p. 7.Note: 09410

• J. Hagedorn, J. Terrill, J. Kelso and J. Dunkers, Measurement of Tissue Engineering Scaffolding Material delivered at DIVERSE Birds of a Feather session at SIGGRAPH 2006, Boston, MA, August 2006.

• J. Dunkers, J. Hagedorn, A. Peskin, J. Kelso, J. Terrill and L. Henderson, Interactive, Quantitative Analysis of Scaffold Structure Using Immersive Visualization in Proceedings of the 2006 Summer Bioengineering Conference, Amelia Island, FL, June 2006.

• Z. Levine, A. Kearsley and J. Hagedorn, Bayesian Tomography for Projections with an Arbitrary Transmission Function with an Application to Electron Tomography, Journal of Research of NIST, 111(6), November-December 2006, pp. 411-417.

• E. J. Garboczi, J. F. Douglas and R. B. Bohn, A Hybrid Finite Element-Analytical Method for Determining the Intrisic Elastic Moduli of Particles Having Moderately Extended Shapes and a Wide Range of Elastic Properties, Mechanics of Materials, 38, 2006, pp. 786-800.

• S. T. Erdogan, P. N. Quiroga, D. W. Fowler, H. A. Saleh, R. A. Livingston, E. J. Garboczi, P. M. Ketcham, J. G. Hagedorn and S. G. Satterfield, Three-Dimensional Shape Analysis of Coarse Aggregates: New Techniques for and Preliminary Results on Several Different Coarse Aggregates and Reference Rocks, Cement and Concrete Research, 36, 2006, pp. 1619-1627.

2005

• J. E. Devaney, S. G. Satterfield, J. G. Hagedorn, J. T. Kelso, A. P. Peskin, W. L. George, T. J. Griffin, H. K. Hung and R. D. Kriz, Science at the Speed of Thought, in Ambient Intelligence for Scientific Discovery: Lecture Notes in Artificial Intelligence, 3345, 2005, pp. 1-24.
  Note: 0302-9743

• W. George, J. Lancien and J. Terrill, MPMD Program Model for Scientific Computing delivered at Scatter/Gather Session II, Supercomputing 2005, Seattle, WA, November 2005.

• J. Kelso, DIVERSE delivered at ACM SIGGRAPH 2005 Conference, DIVERSE Birds of a Feather (BOF) Session, Los Angeles, CA, August 2005.

• J. Kelso, DIVERSE delivered at IEEE Visualization Conference: DIVERSE Birds of a Feather session, Minneapolis, MN, October 2005.

• S. Satterfield, Shell Script VR delivered at ACM SIGGRAPH 2005 Conference, DIVERSE Birds of a Feather (BOF) Session, Los Angeles, CA, August 2005.

• S. Satterfield, Shell Script VR delivered at IEEE Visualization Conference: DIVERSE Birds of a Feather session, Seattle, WA, November 2005.

• J. Sims, G. Bryant and H. Hung, Instrinsic Surface States in Semiconductor Nanocrystals: HgS Quantum Dots delivered at American Physical Society, Los Angeles, CA, March 2005.

• H. S. Bennett, H. Hung and A. Heckert, Dependence of Electron Density on Fermi Energy in Compensated n-Type Gallium Antimonide, Journal of Applied Physics, 98 (10), November 2005, p. 103705.

• C.-J. Haecker, E. J. Garboczi, J. W. Bullard, R. B. Bohn, Z. Sun, S. P. Shah and T. Voight, Modeling the Linear Elastic Properties of Portland Cement Paste, Cement and Concrete Research, 35, 2005, pp. 1948-1960.

2004

• J. S. Sims and N. S. Martys, Simulation of Sheared Suspensions with a Parallel Implementation of QDPD, Journal of Research of NIST, 109(2), pp. 267-277.

• J. G. Hagedorn, N. S. Martys, and J. F. Douglas, Breakup of a Fluid Thread in a Confined Geometry: Droplet-Plug Transition, Perturbation Sensitivity, and Kinetic Stabilization with Confinement, Physical Review E, 69(5):056312, 2004.

• J. E. Devaney, S. G. Satterfield and J. G. Hagedorn, Science at the Speed of Thought in Workshop on Ambient Intelligence for Scientific Discovery, Vienna, Austria, April 2004.
  Note: This workshop was held in conjunction with CHI 2004, The Conference on Human Factors in Computing Systems.

• J. S. Sims and S. A. Hagstrom, Math and Computational Science Issues in High-Precision Hy-CI Calculations I. Three-Electron Integrals, Journal of Physics B: Atomic, Molecular, and Optical Physics, 37 (7), 2004, pp. 1519-1540.

• J. Douglas, N. Martys and J. Hagedorn, Breakup of a Fluid Thread in a Confined Geometry, delivered at American Physical Society Meeting, March 2004.

• W. L. George, J. G. Hagedorn and J. E. Devaney, Parallel Programming with Interoperable MPI, Dr. Dobbs Journal, February 2004, pp. 49-53.
  Note: Also available as NISTIR 7066, December 2003.

2003

• C. T. Brown, H. W. Bullen, S. P. Kelly, R. K. Xiao, S. G. Satterfield, J. G. Hagedorn and J. E. Devaney, Visualization and Data Mining in a 3D Immersive Environment: Summer Project 2003, Internal Report, June 2003.

• H. S. Bennett and H. K. Hung, Dependence of Electron Density on Fermi Energy in N-Type Gallium Antimonide, Journal of Research of NIST, 108(3), May-June 2003, pp. 193-197.

• J. S. Sims and S. A. Hagstrom, Comment on "Analytic Value of the Atomic Three-electron Integral with Slater Wave Functions", Physical Review A, 68, 2003. ID: 016501.
  Note: Comment: Phys. Rev. A 44,5492(1991)

• J. Kelso, S. G. Satterfield, L. E. Arsenault, P. M. Ketcham and R. D. Kriz, DIVERSE: A Framework for Building Extensible and Reconfigurable Device Independent Virtual Environments and Distributed Asynchronous Simulations, Presence: Teleoperators and Virtual Environments, 12 (1), February 2003.

• H. Fowler, J. Devaney and J. Hagedorn, Growth Model for Filamentary Streamers in an Ambient Field, IEEE Transactions on Dielectrics and Electrical Insulation, 10(1), February 2003.

• P. M. Ketcham and D. L. Feder, Visualizing Bose-Einstein Condensates, Computing in Science and Engineering, 5 (1), January-February 2003, pp. 86-89.

• Y. Son, N. S. Martys, J. G. Hagedorn and K. Migler, Suppression of Capillary Instability of a Polymeric Thread via Parallel Plate Confinement, Macromolecules, 36, 2003, pp. 5825-5833.

• R. B. Bohn and E. J. Garboczi, User Manual for Finite Element and Finite Difference Programs: A Parallel Version of NISTIR-6269, National Institute of Standards and Technology, NISTIR 6997, June 2003.

2002

• N. S. Martys and J. G. Hagedorn, Multiscale modeling of fluid transport in heterogeous materials using descrete Boltzmann methods, Materials and Structures, 35, December 2002, pp. 650-659.  

• H. W. Bullen IV, J. S. Chang, A. V. Harn, S. P. Kelly, S. G. Satterfield, P. M. Ketcham and J. E. Devaney, A Glyph Toolbox for Immersive Scientific Visualization, National Institute of Standards and Technology, NISTIR 6924, October 2002.

• W. L. George and J. Scott, Screen Saver Science: Realizing Distributed Parallel Computing with Jini and JavaSpaces in 2002 Conference on Parallel Architectures and Compilation Techniques (PACT2002), Charlottesville, VA, September 2002.

• J. E. Devaney and J. G. Hagedorn, Discovery in Hydrating Plaster Using Multiple Machine Learning Methods, in Discovery Science, Springer, Lecture Notes in Computer Science 2534, 2002, pp. 47-58.
  Note: Proceedings of the 5th International Conference on Discovery Science, DS 2002, Lubeck, Germany, November 2002.

• J. S. Sims, W. L. George, S. G. Satterfield, H. K. Hung, J. G. Hagedorn, P. M. Ketcham, T. J. Griffin, S. A. Hagstrom, J. C. Franiatte, G. W. Bryant, W. Jaskolski, N. S. Martys, C. E. Bouldin, V. Simmons, O. P. Nicolas, J. A. Warren, B. A. am Ende, J. E. Koontz, B. J. Filla, V. G. Pourprix, S. R. Copley, R. B. Bohn, A. P. Peskin, Yo. M. Parker and J. E. Devaney, Accelerating Scientific Discovery Through Computation and Visualization II, Journal of Research of NIST, 107(3), May-June 2002, pp. 223-245.

• R. D. Kriz, J, Kelso and A. Ray, Visual Interpretation and Analysis of HPC Nanostructure Models using Shared Virtual Environments, Modeling and Simulation, 1 (4), 2002, pp. 9-10.

• J. Kelso, L. E. Arsenault, S. G. Satterfield and R. D. Kriz, DIVERSE: A Framework for Building Extensible and Reconfigurable Device Independent Virtual Environments in Proceedings of the Virtual Reality 2002 Conference, Orlando, FL, March 2002.

• D. P. Bentz, S. Mizell, S. G. Satterfield, J. E. Devaney, W. L. George, P. M. Ketcham, J. Graham, J. Porterfield, D. Quenard, F. Vallee, H. Sallee, E. Boller and J. Baruchel, The Visible Cement Dataset, Journal of Research of NIST, 107 (2), March-April 2002, pp. 137-148.  

• J. S. Sims and S. A. Hagstrom, High Precision Hy-CI Variational Calculations for the Ground State of Neutral Helium and Heliumlike Ions, International Journal of Quantum Chemistry, 90 (6), 2002, pp. 1600-1609.
  Note: DOI 10.1002/qua.10344

• A. L. Ankudinov, C. E. Bouldin, J. J. Rehr, J. S. Sims and H. K. Hung, Parallel Calculation of Electron Multiple Scattering Using Lanczos Algorithms, Physical Review B, 65 (10), 2002.

• W. L. George and J. A. Warren, A Parallel 3D Dendritic Growth Simulator Using the Phase-field Method, Journal of Computational Physics, 177, 2002, pp. 264-283.  

• G. W. Bryant, J. Aizpurua, R. Xie, J. C. Franiatte, J. E. Devaney, W. Jaskolski, M. Zielinski, S. Lee, J. Kim, L. Jonsson and J. W. Wilkins, Designing the Nanoworld: Atomic Scale Simulations of Nanostructures and Nanodevices delivered at NIST Nanotechnology Open House, Gaithersburg, MD, June 2002.  

• J. C. Franiatte, J. E. Devaney, G. W. Bryant, S. G. Satterfield and W. L. George, Building Nanostructures Interactively in an Immersive Visualization Environment delivered at NIST Nanotechnology Open House, Gaithersburg, MD, June 2002.  

• J. C. Franiatte, S. G. Satterfield, G. W. Bryant and J. E. Devaney, Parallelization and Visualization of Computational Nanotechnology LCAO Method delivered at Nanotechnology at the Interface of Information Technology, New Orleans, LA, February 2002.

• J. Devaney and J. Hagedorn, The Role of Genetic Programming in Describing the Microscopic Structure of Hydrating Plaster in Late Breaking Papers in Genetic Programming, Genetic and Evolutionary Computation Conference (GECCO 2002), San Francisco, July 2002.  

2001

• N. S. Martys, J. G. Hagedorn, and J. E. Devaney. Pore Scale Modeling of Fluid Transport Using Discrete Boltzmann Methods, Materials Science of Concrete Special Volume: Ion and Mass Transport in Cement-Based Materials, pages 239–252. American Ceramic Society, 2001.

• M. Michel, Contribution au Transfert de Donnees: Application a MPI, Ph.D. dissertation, Universite Henri Poincare, October 2001.

• C. E. Bouldin, J. S. Sims, H. K. Hung, J. J. Rehr and A. L. Ankudinov, Rapid Calculation of X-ray Absorption Near Edge Structure Using Parallel Computing, Journal of X-ray Spectroscopy, 30, 2001, pp. 431-434.

• J. Hagedorn and J. Devaney, A Genetic Programming System with a Procedural Representation in Late Breaking Papers in Genetic Programming, Genetic and Evolutionary Computation Conference (GECCO 2001), San Francisco, July 2001.

• J. Devaney, J. Hagedorn, O. Nicolas, G. Garg, A. Samson and M. Michel, A Genetic Programming Ecosystem in The 15th Annual International Parallel and Distributed Processing Symposium, IPDPS 2001, Workshop on Biologically Inspired Solutions to Parallel Processing Problems, San Francisco, April 2001.  

• P. M. Ketcham, D. L. Feder, C. W. Clark, S. G. Satterfield, T. J. Griffin, W. L. George, B. I. Schneider and W. P. Reinhardt, Volume Visualization of Bose-Einstein Condensates, National Institute of Standards and Technology, NISTIR 6739, April 2001.  

• J. S. Sims, J. G. Hagedorn, P. M. Ketcham, S. G. Satterfield, T. J. Griffin, W. L. George, H. A. Fowler, B. A. am Ende, H. K. Hung, R. B. Bohn, J. E. Koontz, N. S. Martys, C. E. Bouldin, J. A. Warren, D. L. Feder, C. W. Clark, B. J. Filla and J. E. Devaney, Accelerating Scientific Discovery Through Computation and Visualization, National Institute of Standards and Technology, NISTIR 6709, July 2001. 

2000

• J. S. Sims, J. G. Hagedorn, P. M. Ketcham, S. G. Satterfield, T. J. Griffin, W. L. George, H. A. Fowler, B. A. am Ende, H. K. Hung, R. B. Bohn, J. E. Koontz, N. S. Martys, C. E. Bouldin, J. A. Warren, D. L. Feder, C. W. Clark, B. J. Filla and J. E. Devaney, Accelerating Scientific Discovery Through Computation and Visualization, Journal of Research of NIST, 105(6), November-December 2000, pp. 875-894.

• P. Ketcham and D. Feder, Bose-Einstein Condensate, illustration in Graham P. Collins, The Coolest Gas in the Universe, Scientific American, 283(6), December 2000, p. 68-69.

• J. E. Devaney, The Role of Choice in Discovery, Lecture Notes in Artificial Intelligence, LNAI 1967, December 2000, pp. 247-251.
  Note: Third International Conference on Discovery Science, DS 2000, Kyoto, Japan, December 2000

• P. Ketcham and D. Feder, Bose-Einstein Condensate, Optics & Photonics News, 11(12), December 2000, cover.

• J. Devaney, J. Hagedorn, S. Satterfield, B. am Ende and H. Hung, Tool Integration, Development, and Visualization for High Throughput Experiment Environments delivered at Workshop on Combinatorial Methods for Materials: Systems Integration in High Throughput Experimentation, Los Angeles, CA, November 2000.

• N. Martys and J. Sims, Application of Dissipative Particle Dynamics for Modeling Cement Based Materials delivered at Symposium on Materials Science of High Performance Concrete, November 2000.

• E. Landis, S. Lu, N. Martys and J. Hagedorn, Experiments and Simulations of Concrete Microstructure Permeability, delivered at Symposium on Materials Science of High Performance Concrete, November 2000.

• P. Ketcham and D. Feder, Bose-Einstein Condensate, Parity, August 2000, cover.

• J. Devaney, D. Goujon, H. Hung, J. Koontz, R. Lipman, R. McCormack, M. Michel and K. Pagoaga, The PADE Development Environment and Associated Tools, Acknowledged in: David H. M. Spector, Building Linux Clusters with CDROM, O'Reilly Associates, July 2000.
  Note: ISBN: B0000667GB

• Peter Ketcham and David Feder, Bose-Einstein Condensate, SIGGRAPH 2000 Technical Slide Set, July 2000, no. 11.

• N. Martys and J. Sims, Modeling the Rheological Properties of Concrete in The Virtual Cement and Concrete Testing Laboratory Documentation System, Building and Fire Research Laboratory, NIST, June 2000.

• C. Clark, D.Feder, B. Schneider and P. Ketcham, Dynamics of Vortex Formation in Rotating Bose-Einstein Condensates delivered at Workshop on Rotating Bose-Einstein Condensates, European Centre for Theoretical Studies in Nuclear Physics, Trento, Italy, June 2000.

• J. Hagedorn and J. Devaney, Parallel Genetic Programming delivered at Workshop on Combinatorial Methods, National Institute of Standards and Technology, May-June 2000.

• S. Buntin, S. Robey, S. Stranick, P. Schenck, D. Kaiser, J. Devaney, B. Anne am Ende and H. Hung, Scanning Evanescent Probe Microscopy for High Throughput Materials Analysis delivered at Workshop on Combinatorial Methods, National Institute of Standards and Technology, May-June 2000.  

• P. Ketcham, Volume Visualizations of Bose Einstein Condensates delivered at Conference on Visualization Development Environments, Princeton, NJ, April 2000.  

• W. C. Liu, S. N. Houde-Walter, D. L. Veasey and A. P. Peskin, Design and Optimization of a Diode-Pumped, Glass Waveguide Laser, Applied Optics, 39(33), pp. 6165-6173.

• E. D. Marquardt, R. Radebaugh and A. P. Peskin, Vapor Precooling in a Pulse Tube Liquefier in Cryocoolers 11, Proceedings of the 11th International Cryocooler Conference, Keystone, CO, June 2000.  

• E. W.Lemmon, D. G.Friend, A. H.Harvey, M. L.Huber, M. O.McLinden and A. P.Peskin, Thermophysical Property Databases from NIST delivered at 14th Symposium on Thermophysical Properties, Boulder, CO, June 2000.

• S. Satterfield, J. Warren and W. George, A Simulated Dendrite of Copper-Nickel Alloy As It Is Growing, cover of Journal of Research of the NIST, 105(3), May-June 2000.

• W. George, Parallel Programming in MPI: From Local Clusters to Global Grids, in Computational Sciences Seminar Series, Invited talk presented at George Mason University, April 2000.  

• H. El-Sayed, M. Salit, J. C.Travis, J. Devaney and W. George, Parallel Maximum-Likelihood Inversion for Estimating Wavenumber-Ordered Spectra in Emission Spectroscopy in Proceedings of the International Parallel and Distributed Processing Symposium 2000 (IPDPS 2000), Cancun, Mexico, May 2000.  

• J. Squyres, A. Lumsdaine, W. George, J. Hagedorn and J. Devaney, The Interoperable Message Passing Interface (IMPI) Extensions to LAM/IMPI delivered at Message Passing Interface and High Performance Clusters Developer's and User's Conference, Ithaca, NY, March 2000.  

• W. L. George, J. G. Hagedorn and J. E. Devaney, IMPI: Making MPI Interoperable, Journal of Research of NIST, 105(3), May-June 2000

• IMPI Steering Committee, IMPI: Interoperable Message-Passing Interface, January 2000.

• M. Michel and J. Devaney, A Generalized Approach for Transferring Data-Types with Arbitrary Communication Libraries in Proceedings of the Workshop on Multimedia Network Systems (MMNS 2000) at the 7th International Conference on Parallel and Distributed Systems, Iwate, Japan, July 2000.

• N. S. Martys and J. S. Sims, Modeling the Rheological Properties of Concrete delivered at Virtual Cement and Concrete Testing Laboratory Meeting, Gaithersburg, MD, June 2000.  

• O. Nicolas, AutoMap/AutoLink Users Manual, May 2000. Available as NIST Internal Report .

• P. Ketcham and D. Feder, Bose-Einstein Condensate, cover of Physics Laboratory Technical Activities 1999, Physics Laboratory, National Institute of Standards and Technology, NISTIR 6438, March 2000.

1999

• P. Ketcham and D. Feder, An image of Vortices in a Rotating Bose Einstein Condensate, cover of Physics Today, December 1999.

• N. Martys, J. Hagedorn, D. Goujon and J. Devaney, Large Scale Simulations of Single and Multi-Component Flow in Porous Media in Proceedings of SPIE, 3772, pp. 205-213, July 1999.

• R. McCormack, J. Koontz and J. Devaney, Secure Web-based Access to High Performance Computing Resources, ITL Bulletin, Information Technology Laboratory, NIST, January 1999.  

• R. McCormack, J. Koontz and Judith Devaney, An Authentication Framework for Web Access to Remote Hosts, National Institute of Standards and Technology, NISTIR 6278, January 1999.

• T. Vorburger, E. Marx, M. McKnight, M. Galler, M. VanLandingham, M. Nadal, P. Barnes, A. Thompson, F. Hunt and P. Ketcham, Measurements and Predictions of Light Scattering by Coatings delivered at American Society for Testing and Materials, Committee E-12, Annual Meeting, Ft. Lauderdale, FL, January 1999.

• D. Feder, B. Schneider, B. Reinhardt, W. George, P. Ketcham, T. Griffin and C. Clark, Generation of Solitons and Vortices in BECs by Trap Rotation and Optical Imprinting delivered at Workshop on Bose-Einstein Condensation and Degenerate Fermi Gases, February 1999. 

• P. Ketcham, D. Feder, W. Reinhardt, C. Clark and W. George, Visualization of the Bose-Einstein Condensate, National Institute of Standards and Technology, NISTIR 6355, 1999. 

• J. Devaney, Parallel Computing and the Structure of Science, presented in Computational Sciences Seminar Series, George Mason University, February 1999.

• M. Michel, A. Schaff and J. Devaney, Managing data-types: the CORBA approach and AutoLink, an MPI solution delivered at Message Passing Interface Developer's and User's Conference (MPIDC'99), Atlanta, GA, March 1999.  

• W. George, Dynamic Load Balancing for Data-Parallel MPI Programs delivered at Message Passing Interface Developer's and User's Conference, Atlanta, GA, March 1999.

• W. George, J. Hagedorn and J. Devaney, Status Report on the Development of the Interoperable MPI Specification, delivered at Message Passing Interface Developer's and User's Conference, Atlanta, GA, March 1999.

• E. L. Shirley, L. X. Benedict and R. B. Bohn, Theory of Optical Absorption with Electron-Hole Attraction in Proceedings of the Seventh International Symposium on Physics and Chemistry of Luminescent Materials, C. W. Struck, K.C. Mishra and B. Di Bartolo (Ed.), 1999, 98(24), pp. 36-48.  

• A. J. Slifka, B. J. Filla and J. K. Stalick, Thermal Conductivity of Two Compositions of Yttria Stabilized Zirconia delivered at 25th International Thermal Conductivity Conference and 13th International Thermal Expansion Symposium, Ann Arbor, MI, June 1999. 

• R. McCormack, J. Koontz and J. Devaney, Seamless Computing with WebSubmit, Journal of Concurrency, Practice, and Experience: Special issue on Aspects of Seamless Computing, 11 (12), 1999, pp. 1-15.  

• W. George, J. Hagedorn and J. Devaney, A Java-Based Tool for Testing the Interoperable MPI Protocol, Proceedings of the The First International Conference and Exhibition on the Practical Application of Java, London, UK, April 1999, pp. 111-124

• P.M.Peters, D.S.Funk, A.P.Peskin, D.L. Veasey, N.A.Sanford, S.N.Houde-Walter and J.S.Hayden, Ion-Exchanged Waveguide Lasers in Er³⁺/Yb³⁺ Codoped Silicate Glass, Applied Optics, 38(33), pp. 6879-6886.  

• D. L. Veasey, D. S. Funk, P. M. Peters, N. A. Sanford, G. E. Obarski, N. Fontaine, M. Young, A. P. Peskin, W, Liu, S. N.Houde-Walter and J. S. Hayden, Yb/Er-codoped and Yb-doped Waveguide Lasers in Phosphate Glass, Journal of Non-Crystalline Solids, 263, pp. 369-381.  

• R. Luo, L. David, H. Hung, J. Moult, J. Devaney and M. Gilson, The Strength of Solvent-Exposed Salt Bridges, Journal of Physical Chemistry B, 103, 1999, pp. 727-736.

•  M. Michel and J. Devaney, Fine Packet Size Tuning with AutoLink in Proceedings of the International Workshop on Parallel Computing (IWPP '99), Aizu, Japan, September 1999.  

• J. Koontz and J. Devaney, WebSubmit, invited talk delivered at Symposium on Multidisciplinary Applications and Interoperability (MAPINT), Fairborn, OH, August 1999.  

• J. Hagedorn, N. Martys, D. Goujon and J. Devaney, A Parallel Lattice Boltzmann Algorithm for Fluid Flow in Complex Geometries delivered at Symposium on Computational Advances in Modeling Heterogeneous Materials, Fifth National Congress on Computational Mechanics, August 1999.  

• H. A. Fowler, J. E. Devaney and J. G. Hagedorn, Shaping of Filamentary Streamers by the Ambient Field delivered at 1999 Conference on Electrical Insulation and Dielectric Phenomena, Austin, TX, October 1999.  

1998

• H. A. Fowler, J. E. Devaney, J. G. Hagedorn and F. E. Sullivan, Dielectric Breakdown in a Simplified Parallel Model in Computers in Physics, 12(5), American Institute of Physics, 1998, pp. 478-487.  

• S. G. Nash and A. A. Sofer, On the Complexity of a Practical Interior-Point Method, SIAM Journal of Optimization, 8(3), August 1998, pp. 833-849.  

• S. G. Nash, Nonlinear Programming, OR/MS Today, 25(3), June 1998.

• H. A. Fowler, J. E. Devaney and J. G. Hagedorn, User Guide to CADMUS, a Simplified Parallel Code for Laplacian Fractal Growth, National Institute of Standards and Technology, NISTIR 6180, June 1998.  

• H. A. Fowler, J. E. Devaney, J. G. Hagedorn and F. Sullivan, Dielectric Breakdown in a Simplified Parallel Model, National Institute of Standards and Technology, NISTIR 6174, June 1998.

• R. McCormack, J. Koontz and J. Devaney, WebSubmit: Web Based Applications with Tcl, National Institute of Standards and Technology, NISTIR 6165, June 1998.

• A. Roosen, R. McCormack and W. C. Carter, Wulffman: A Tool for the Calculation and Display of Crystal Shapes, Computational Materials Science, 11(1), March 1998, pp. 16-26.

• L. Benedict, E. Shirley and R. Bohn, Optical Absorption of Insulators and the Electron-Hole Interaction: An Ab Initio Calculation, Physical Review Letters, 80(20), May 1998, pp. 4514-4517.  

• L. Benedict, E. Shirley and R. Bohn, Theory of Optical Absorption in Diamond, Si, Ge, and GaAs, Physical Review B, 57(16), April 1998, p. R9385. 

• D. Goujon, M. Michel, J. Peeters and J. Devaney, AutoMap and AutoLink: Tools for Communicating Complex and Dynamic Data-structures Using MPI in Network-Based Parallel Computing Communication, Architecture, and Applications, Lecture Notes in Computer Science, 1362, Springer, 1998, pp. 98-109.

• D. Goujon, M. Michel, J. Peeters and J. Devaney, AutoMap and AutoLink: Review of Tools for Communicating Complex and Dynamic Data-Structures Using MPI, Reseau ESIAL, 4, January 1998, p. 2.

• R. McCormack, J. Koontz and J. Devaney, WebSubmit: Access to Remote computers via the Web, invited talk delivered at Meeting on Desktop Access to Remote Systems, Argonne National Laboratory, October 1998.

• L. X. Benedict, E. L. Shirley and R. B. Bohn, Iterative Computation of Optical Absorption Including the Electron-Hole Interaction delivered at Tenth Annual Workshop on Recent Developments in Electronic Structure Algorithms, U. Penn., Philadelphia, PA, May 1998.

• E. L. Shirley, L. X. Benedict and R. B. Bohn, Ab Initio Calculation of Absorption Spectra with Excitonic Effects delivered at Spectroscopy of Electronic Excitations in Materials, U. Valladolid, Valladolid, Spain, September 1998.

• The Message Passing Interface Forum (author), MPI2: A Message-Passing Interface Standard, The International Journal of Supercomputer Applications and High Performance Computing, Special issue on MPI, 12(1-2), 1998.
  Note: J. Hagedorn and J. Devaney are Active Participants of the Message Passing Interface Forum, and NIST is a Supporting Institution of the MPI Forum.

1997

• J. Devaney, Equation Discovery Through Global Self Referential Geometric Invariants and Machine Learning, Ph.D. Dissertation, George Mason University, December 1997.

• J. Koontz, R. McCormack, J. Devaney and R. Lipman, WebSubmit: A Paradigm for Platform Independent Computing, invited talk delivered at Workshop on Seamless Computing, ECMWF, Reading, England, September 1997.

• N. Martys and J. Hagedorn, Numerical Simulation of Fluid Transport in Complex Geometries delivered at International Conference on Computational Physics, American Physical Society, 1997.  

• J. Devaney, M. Michel, J. Peeters and E. Baland, AutoMap : A Data Structures Compiler for the Automatic Generation of MPI Data Structures Directly From C Code, Internal Report, April 1997.

1996

• R. Lipman and J. E. Devaney, WebSubmit: Running Supercomputer Applications Via the WEB, poster presented at Supercomputing 96, Pittsburgh, PA, November 1996.

• K. H. J. Vrielink, E. C. Baland and J. E. Devaney, AutoLink: An MPI Library for Sending and Receiving Dynamic Data Structures, poster presented at International Conference on Parallel Computing, University of Minnesota Supercomputer Institute, October 1996.

• J. Devaney, Parallel Universes, Perpendicular Thinking, Insight, and Everything, invited talk delivered at Naval Research Laboratory Workshop on Parallel Computing, 1996.