NIST logo
*
Bookmark and Share

HPCVG Publications and Presentations

Here is a list of publications and presentations written or co-authored by staff of the High Performance Computing and Visualzation Group of the Applied and Computational Mathematics Division of NIST.

 

2011

 

 

2010

 

2009

 

2008

 

2007

 

2006

  •  J. Hagedorn, J. Dunkers, A. Peskin, J. Kelso and J. Terrill, Quantitative, Interactive Measurement of Tissue Engineering Scaffold Structure in an Immersive Visualization Environment, Biomaterials Forum, 28, 2006, pp. 6-9 and cover.

  • H. Hung, Visualization of a Quantum Dot, National Geographic Online Edition, June 2006.

  • J. Sims, G. Bryant and H. Hung, Excitons in Negative Band Gap Nanocrystals delivered at American Physics Society March Meeting, Baltimore, MD, March 2006.

  • J. S. Sims and S. A. Hagstrom, High Precision Variational Born-Oppenheimer Energies of the Ground State of the Hydrogen Molecule Journal of Chemical Physics, 124 (9), 2006, p. 7.
    Note:
    09410

  • J. Hagedorn, J. Terrill, J. Kelso and J. Dunkers, Measurement of Tissue Engineering Scaffolding Material delivered at DIVERSE Birds of a Feather session at SIGGRAPH 2006, Boston, MA, August 2006.

  • J. Dunkers, J. Hagedorn, A. Peskin, J. Kelso, J. Terrill and L. Henderson, Interactive, Quantitative Analysis of Scaffold Structure Using Immersive Visualization in Proceedings of the 2006 Summer Bioengineering Conference, Amelia Island, FL, June 2006.

  • Z. Levine, A. Kearsley and J. Hagedorn, Bayesian Tomography for Projections with an Arbitrary Transmission Function with an Application to Electron Tomography, Journal of Research of NIST, 111(6), November-December 2006, pp. 411-417.

  • E. J. Garboczi, J. F. Douglas and R. B. Bohn, A Hybrid Finite Element-Analytical Method for Determining the Intrisic Elastic Moduli of Particles Having Moderately Extended Shapes and a Wide Range of Elastic Properties, Mechanics of Materials, 38, 2006, pp. 786-800.

  • S. T. Erdogan, P. N. Quiroga, D. W. Fowler, H. A. Saleh, R. A. Livingston, E. J. Garboczi, P. M. Ketcham, J. G. Hagedorn and S. G. Satterfield, Three-Dimensional Shape Analysis of Coarse Aggregates: New Techniques for and Preliminary Results on Several Different Coarse Aggregates and Reference Rocks, Cement and Concrete Research, 36, 2006, pp. 1619-1627.

 

2005

  • J. E. Devaney, S. G. Satterfield, J. G. Hagedorn, J. T. Kelso, A. P. Peskin, W. L. George, T. J. Griffin, H. K. Hung and R. D. Kriz, Science at the Speed of Thought, in Ambient Intelligence for Scientific Discovery: Lecture Notes in Artificial Intelligence, 3345, 2005, pp. 1-24.
    Note:
    0302-9743

  • W. George, J. Lancien and J. Terrill, MPMD Program Model for Scientific Computing delivered at Scatter/Gather Session II, Supercomputing 2005, Seattle, WA, November 2005.

  • J. Kelso, DIVERSE delivered at ACM SIGGRAPH 2005 Conference, DIVERSE Birds of a Feather (BOF) Session, Los Angeles, CA, August 2005.

  • J. Kelso, DIVERSE delivered at IEEE Visualization Conference: DIVERSE Birds of a Feather session, Minneapolis, MN, October 2005.

  • S. Satterfield, Shell Script VR delivered at ACM SIGGRAPH 2005 Conference, DIVERSE Birds of a Feather (BOF) Session, Los Angeles, CA, August 2005.

  • S. Satterfield, Shell Script VR delivered at IEEE Visualization Conference: DIVERSE Birds of a Feather session, Seattle, WA, November 2005.

  • J. Sims, G. Bryant and H. Hung, Instrinsic Surface States in Semiconductor Nanocrystals: HgS Quantum Dots delivered at American Physical Society, Los Angeles, CA, March 2005.

  • H. S. Bennett, H. Hung and A. Heckert, Dependence of Electron Density on Fermi Energy in Compensated n-Type Gallium Antimonide, Journal of Applied Physics, 98 (10), November 2005, p. 103705.

  • C.-J. Haecker, E. J. Garboczi, J. W. Bullard, R. B. Bohn, Z. Sun, S. P. Shah and T. Voight, Modeling the Linear Elastic Properties of Portland Cement Paste, Cement and Concrete Research, 35, 2005, pp. 1948-1960.

 

2004

  • J. S. Sims and N. S. Martys, Simulation of Sheared Suspensions with a Parallel Implementation of QDPD, Journal of Research of NIST, 109(2), pp. 267-277.

  • J. G. Hagedorn, N. S. Martys, and J. F. Douglas, Breakup of a Fluid Thread in a Confined Geometry: Droplet-Plug Transition, Perturbation Sensitivity, and Kinetic Stabilization with Confinement, Physical Review E, 69(5):056312, 2004.

  • J. E. Devaney, S. G. Satterfield and J. G. Hagedorn, Science at the Speed of Thought in Workshop on Ambient Intelligence for Scientific Discovery, Vienna, Austria, April 2004.
    Note:
    This workshop was held in conjuntion with CHI 2004, The Conference on Human Factors in Computing Systems.

  • J. S. Sims and S. A. Hagstrom, Math and Computational Science Issues in High-Precision Hy-CI Calculations I. Three-Electron Integrals, Journal of Physics B: Atomic, Molecular, and Optical Physics, 37 (7), 2004, pp. 1519-1540.

  • J. Douglas, N. Martys and J. Hagedorn, Breakup of a Fluid Thread in a Confined Geometry, delivered at American Physical Society Meeting, March 2004.

  • W. L. George, J. G. Hagedorn and J. E. Devaney, Parallel Programming with Interoperable MPI, Dr. Dobbs Journal, February 2004, pp. 49-53.
    Note:
    Also available as NISTIR 7066, December 2003.

 

2003

 

2002

 

2001

  • N. S. Martys, J. G. Hagedorn, and J. E. Devaney. Pore Scale Modeling of Fluid Transport Using Discrete Boltzmann Methods, Materials Science of Concrete Special Volume: Ion and Mass Transport in Cement-Based Materials, pages 239–252. American Ceramic Society, 2001.

  • M. Michel, Contribution au Transfert de Donnees: Application a MPI, Ph.D. dissertation, Universite Henri Poincare, October 2001.

  • C. E. Bouldin, J. S. Sims, H. K. Hung, J. J. Rehr and A. L. Ankudinov, Rapid Calculation of X-ray Absorption Near Edge Structure Using Parallel Computing, Journal of X-ray Spectroscopy, 30, 2001, pp. 431-434.

  • J. Hagedorn and J. Devaney, A Genetic Programming System with a Procedural Representation in Late Breaking Papers in Genetic Programming, Genetic and Evolutionary Computation Conference (GECCO 2001), San Francisco, July 2001.

  • J. Devaney, J. Hagedorn, O. Nicolas, G. Garg, A. Samson and M. Michel, A Genetic Programming Ecosystem in The 15th Annual International Parallel and Distributed Processing Symposium, IPDPS 2001, Workshop on Biologically Inspired Solutions to Parallel Processing Problems, San Francisco, April 2001.  

  • P. M. Ketcham, D. L. Feder, C. W. Clark, S. G. Satterfield, T. J. Griffin, W. L. George, B. I. Schneider and W. P. Reinhardt, Volume Visualization of Bose-Einstein Condensates, National Institute of Standards and Technology, NISTIR 6739, April 2001.  

  • J. S. Sims, J. G. Hagedorn, P. M. Ketcham, S. G. Satterfield, T. J. Griffin, W. L. George, H. A. Fowler, B. A. am Ende, H. K. Hung, R. B. Bohn, J. E. Koontz, N. S. Martys, C. E. Bouldin, J. A. Warren, D. L. Feder, C. W. Clark, B. J. Filla and J. E. Devaney, Accelerating Scientific Discovery Through Computation and Visualization, National Institute of Standards and Technology, NISTIR 6709, July 2001. 

 

2000

  • J. S. Sims, J. G. Hagedorn, P. M. Ketcham, S. G. Satterfield, T. J. Griffin, W. L. George, H. A. Fowler, B. A. am Ende, H. K. Hung, R. B. Bohn, J. E. Koontz, N. S. Martys, C. E. Bouldin, J. A. Warren, D. L. Feder, C. W. Clark, B. J. Filla and J. E. Devaney, Accelerating Scientific Discovery Through Computation and Visualization, Journal of Research of NIST, 105(6), November-December 2000, pp. 875-894.

  • P. Ketcham and D. Feder, Bose-Einstein Condensate, illustration in Graham P. Collins, The Coolest Gas in the Universe, Scientific American, 283(6), December 2000, p. 68-69.

  • J. E. Devaney, The Role of Choice in Discovery, Lecture Notes in Artificial Intelligence, LNAI 1967, December 2000, pp. 247-251.
    Note:
    Third International Conference on Discovery Science, DS 2000, Kyoto, Japan, December 2000

  • P. Ketcham and D. Feder, Bose-Einstein Condensate, Optics & Photonics News, 11(12), December 2000, cover.

  • J. Devaney, J. Hagedorn, S. Satterfield, B. am Ende and H. Hung, Tool Integration, Development, and Visualization for High Throughput Experiment Environments delivered at Workshop on Combinatorial Methods for Materials: Systems Integration in High Throughput Experimentation, Los Angeles, CA, November 2000.

  • N. Martys and J. Sims, Application of Dissipative Particle Dynamics for Modeling Cement Based Materials delivered at Symposium on Materials Science of High Performance Concrete, November 2000.

  • E. Landis, S. Lu, N. Martys and J. Hagedorn, Experiments and Simulations of Concrete Microstructure Permeability, delivered at Symposium on Materials Science of High Performance Concrete, November 2000.

  • P. Ketcham and D. Feder, Bose-Einstein Condensate, Parity, August 2000, cover.

  • J. Devaney, D. Goujon, H. Hung, J. Koontz, R. Lipman, R. McCormack, M. Michel and K. Pagoaga, The PADE Development Environment and Associated Tools, Acknowledged in: David H. M. Spector, Building Linux Clusters with CDROM, O'Reilly Associates, July 2000.
    Note:
    ISBN: B0000667GB

  • Peter Ketcham and David Feder, Bose-Einstein Condensate, SIGGRAPH 2000 Technical Slide Set, July 2000, no. 11.

  • N. Martys and J. Sims, Modeling the Rheological Properties of Concrete in The Virtual Cement and Concrete Testing Laboratory Documentation System, Building and Fire Research Laboratory, NIST, June 2000.

  • C. Clark, D.Feder, B. Schneider and P. Ketcham, Dynamics of Vortex Formation in Rotating Bose-Einstein Condensates delivered at Workshop on Rotating Bose-Einstein Condensates, European Centre for Theoretical Studies in Nuclear Physics, Trento, Italy, June 2000.

  • J. Hagedorn and J. Devaney, Parallel Genetic Programming delivered at Workshop on Combinatorial Methods, National Institute of Standards and Technology, May-June 2000.

  • S. Buntin, S. Robey, S. Stranick, P. Schenck, D. Kaiser, J. Devaney, B. Anne am Ende and H. Hung, Scanning Evanescent Probe Microscopy for High Throughput Materials Analysis delivered at Workshop on Combinatorial Methods, National Institute of Standards and Technology, May-June 2000.  

  • P. Ketcham, Volume Visualizations of Bose Einstein Condensates delivered at Conference on Visualization Development Environments, Princeton, NJ, April 2000.  

  • W. C. Liu, S. N. Houde-Walter, D. L. Veasey and A. P. Peskin, Design and Optimization of a Diode-Pumped, Glass Waveguide Laser, Applied Optics, 39(33), pp. 6165-6173.
  • E. D. Marquardt, R. Radebaugh and A. P. Peskin, Vapor Precooling in a Pulse Tube Liquefier in Cryocoolers 11, Proceedings of the 11th International Cryocooler Conference, Keystone, CO, June 2000.  

  • E. W.Lemmon, D. G.Friend, A. H.Harvey, M. L.Huber, M. O.McLinden and A. P.Peskin, Thermophysical Property Databases from NIST delivered at 14th Symposium on Thermophysical Properties, Boulder, CO, June 2000.

  • S. Satterfield, J. Warren and W. George, A Simulated Dendrite of Copper-Nickel Alloy As It Is Growing, cover of Journal of Research of the NIST, 105(3), May-June 2000.

  • W. George, Parallel Programming in MPI: From Local Clusters to Global Grids, in Computational Sciences Seminar Series, Invited talk presented at George Mason University, April 2000.  

  • H. El-Sayed, M. Salit, J. C.Travis, J. Devaney and W. George, Parallel Maximum-Likelihood Inversion for Estimating Wavenumber-Ordered Spectra in Emission Spectroscopy in Proceedings of the International Parallel and Distributed Processing Symposium 2000 (IPDPS 2000), Cancun, Mexico, May 2000.  

  • J. Squyres, A. Lumsdaine, W. George, J. Hagedorn and J. Devaney, The Interoperable Message Passing Interface (IMPI) Extensions to LAM/IMPI delivered at Message Passing Interface and High Performance Clusters Developer's and User's Conference, Ithaca, NY, March 2000.  

  • W. L. George, J. G. Hagedorn and J. E. Devaney, IMPI: Making MPI Interoperable, Journal of Research of NIST, 105(3), May-June 2000

  • IMPI Steering Committee, IMPI: Interoperable Message-Passing Interface, January 2000.

  • M. Michel and J. Devaney, A Generalized Approach for Transferring Data-Types with Arbitrary Communication Libraries in Proceedings of the Workshop on Multimedia Network Systems (MMNS 2000) at the 7th International Conference on Parallel and Distributed Systems, Iwate, Japan, July 2000.

  • N. S. Martys and J. S. Sims, Modeling the Rheological Properties of Concrete delivered at Virtual Cement and Concrete Testing Laboratory Meeting, Gaithersburg, MD, June 2000.  

  • O. Nicolas, AutoMap/AutoLink Users Manual, May 2000. Available as NIST Internal Report .

  • P. Ketcham and D. Feder, Bose-Einstein Condensate, cover of Physics Laboratory Technical Activities 1999, Physics Laboratory, National Institute of Standards and Technology, NISTIR 6438, March 2000.

 

1999

  • P. Ketcham and D. Feder, An image of Vortices in a Rotating Bose Einstein Condensate, cover of Physics Today, December 1999.

  • N. Martys, J. Hagedorn, D. Goujon and J. Devaney, Large Scale Simulations of Single and Multi-Component Flow in Porous Media in Proceedings of SPIE, 3772, pp. 205-213, July 1999.

  • R. McCormack, J. Koontz and J. Devaney, Secure Web-based Access to High Performance Computing Resources, ITL Bulletin, Information Technology Laboratory, NIST, January 1999.  

  • R. McCormack, J. Koontz and Judith Devaney, An Authentication Framework for Web Access to Remote Hosts, National Institute of Standards and Technology, NISTIR 6278, January 1999.

  • T. Vorburger, E. Marx, M. McKnight, M. Galler, M. VanLandingham, M. Nadal, P. Barnes, A. Thompson, F. Hunt and P. Ketcham, Measurements and Predictions of Light Scattering by Coatings delivered at American Society for Testing and Materials, Committee E-12, Annual Meeting, Ft. Lauderdale, FL, January 1999.

  • D. Feder, B. Schneider, B. Reinhardt, W. George, P. Ketcham, T. Griffin and C. Clark, Generation of Solitons and Vortices in BECs by Trap Rotation and Optical Imprinting delivered at Workshop on Bose-Einstein Condensation and Degenerate Fermi Gases, February 1999. 

  • P. Ketcham, D. Feder, W. Reinhardt, C. Clark and W. George, Visualization of the Bose-Einstein Condensate, National Institute of Standards and Technology, NISTIR 6355, 1999. 

  • J. Devaney, Parallel Computing and the Structure of Science, presented in Computational Sciences Seminar Series, George Mason University, February 1999.

  • M. Michel, A. Schaff and J. Devaney, Managing data-types: the CORBA approach and AutoLink, an MPI solution delivered at Message Passing Interface Developer's and User's Conference (MPIDC'99), Atlanta, GA, March 1999.  

  • W. George, Dynamic Load Balancing for Data-Parallel MPI Programs delivered at Message Passing Interface Developer's and User's Conference, Atlanta, GA, March 1999.

  • W. George, J. Hagedorn and J. Devaney, Status Report on the Development of the Interoperable MPI Specification, delivered at Message Passing Interface Developer's and User's Conference, Atlanta, GA, March 1999.
  • E. L. Shirley, L. X. Benedict and R. B. Bohn, Theory of Optical Absorption with Electron-Hole Attraction in Proceedings of the Seventh International Symposium on Physics and Chemistry of Luminescent Materials, C. W. Struck, K.C. Mishra and B. Di Bartolo (Ed.), 1999, 98(24), pp. 36-48.  

  • A. J. Slifka, B. J. Filla and J. K. Stalick, Thermal Conductivity of Two Compositions of Yttria Stabilized Zirconia delivered at 25th International Thermal Conductivity Conference and 13th International Thermal Expansion Symposium, Ann Arbor, MI, June 1999. 

  • R. McCormack, J. Koontz and J. Devaney, Seamless Computing with WebSubmit, Journal of Concurrency, Practice, and Experience: Special issue on Aspects of Seamless Computing, 11 (12), 1999, pp. 1-15.  

  • W. George, J. Hagedorn and J. Devaney, A Java-Based Tool for Testing the Interoperable MPI Protocol, Proceedings of the The First International Conference and Exhibition on the Practical Application of Java, London, UK, April 1999, pp. 111-124

  • P.M.Peters, D.S.Funk, A.P.Peskin, D.L. Veasey, N.A.Sanford, S.N.Houde-Walter and J.S.Hayden, Ion-Exchanged Waveguide Lasers in Er3+/Yb3+ Codoped Silicate Glass, Applied Optics, 38(33), pp. 6879-6886.  

  • D. L. Veasey, D. S. Funk, P. M. Peters, N. A. Sanford, G. E. Obarski, N. Fontaine, M. Young, A. P. Peskin, W, Liu, S. N.Houde-Walter and J. S. Hayden, Yb/Er-codoped and Yb-doped Waveguide Lasers in Phosphate Glass, Journal of Non-Crystalline Solids, 263, pp. 369-381.  

  • R. Luo, L. David, H. Hung, J. Moult, J. Devaney and M. Gilson, The Strength of Solvent-Exposed Salt Bridges, Journal of Physical Chemistry B, 103, 1999, pp. 727-736.

  •  M. Michel and J. Devaney, Fine Packet Size Tuning with AutoLink in Proceedings of the International Workshop on Parallel Computing (IWPP '99), Aizu, Japan, September 1999.  

  • J. Koontz and J. Devaney, WebSubmit, invited talk delivered at Symposium on Multidisciplinary Applications and Interoperability (MAPINT), Fairborn, OH, August 1999.  

  • J. Hagedorn, N. Martys, D. Goujon and J. Devaney, A Parallel Lattice Boltzmann Algorithm for Fluid Flow in Complex Geometries delivered at Symposium on Computational Advances in Modeling Heterogeneous Materials, Fifth National Congress on Computational Mechanics, August 1999.  

  • H. A. Fowler, J. E. Devaney and J. G. Hagedorn, Shaping of Filamentary Streamers by the Ambient Field delivered at 1999 Conference on Electrical Insulation and Dielectric Phenomena, Austin, TX, October 1999.  

 

1998

  • H. A. Fowler, J. E. Devaney, J. G. Hagedorn and F. E. Sullivan, Dielectric Breakdown in a Simplified Parallel Model in Computers in Physics, 12(5), American Institute of Physics, 1998, pp. 478-487.  

  • S. G. Nash and A. A. Sofer, On the Complexity of a Practical Interior-Point Method, SIAM Journal of Optimization, 8(3), August 1998, pp. 833-849.  

  • S. G. Nash, Nonlinear Programming, OR/MS Today, 25(3), June 1998.

  • H. A. Fowler, J. E. Devaney and J. G. Hagedorn, User Guide to CADMUS, a Simplified Parallel Code for Laplacian Fractal Growth, National Institute of Standards and Technology, NISTIR 6180, June 1998.  

  • H. A. Fowler, J. E. Devaney, J. G. Hagedorn and F. Sullivan, Dielectric Breakdown in a Simplified Parallel Model, National Institute of Standards and Technolgy, NISTIR 6174, June 1998.

  • R. McCormack, J. Koontz and J. Devaney, WebSubmit: Web Based Applications with Tcl, National Institute of Standards and Technology, NISTIR 6165, June 1998.

  • A. Roosen, R. McCormack and W. C. Carter, Wulffman: A Tool for the Calculation and Display of Crystal Shapes, Computational Materials Science, 11(1), March 1998, pp. 16-26.

  • L. Benedict, E. Shirley and R. Bohn, Optical Absorption of Insulators and the Electron-Hole Interaction: An Ab Initio Calculation, Physical Review Letters, 80(20), May 1998, pp. 4514-4517.  

  • L. Benedict, E. Shirley and R. Bohn, Theory of Optical Absorption in Diamond, Si, Ge, and GaAs, Physical Review B, 57(16), April 1998, p. R9385. 

  • D. Goujon, M. Michel, J. Peeters and J. Devaney, AutoMap and AutoLink: Tools for Communicating Complex and Dynamic Data-structures Using MPI in Network-Based Parallel Computing Communication, Architecture, and Applications, Lecture Notes in Computer Science, 1362, Springer, 1998, pp. 98-109.

  • D. Goujon, M. Michel, J. Peeters and J. Devaney, AutoMap and AutoLink: Review of Tools for Communicating Complex and Dynamic Data-Structures Using MPI, Reseau ESIAL, 4, January 1998, p. 2.

  • R. McCormack, J. Koontz and J. Devaney, WebSubmit: Access to Remote computers via the Web, invited talk delivered at Meeting on Desktop Access to Remote Systems, Argonne National Laboratory, October 1998.

  • L. X. Benedict, E. L. Shirley and R. B. Bohn, Iterative Computation of Optical Absorption Including the Electron-Hole Interaction delivered at Tenth Annual Workshop on Recent Developments in Electronic Structure Algorithms, U. Penn., Philadelphia, PA, May 1998.

  • E. L. Shirley, L. X. Benedict and R. B. Bohn, Ab Initio Calculation of Absorption Spectra with Excitonic Effects delivered at Spectroscopy of Electronic Excitations in Materials, U. Valladolid, Valladolid, Spain, September 1998.

  • The Message Passing Interface Forum (author), MPI2: A Message-Passing Interface Standard, The International Journal of Supercomputer Applications and High Performance Computing, Special issue on MPI, 12(1-2), 1998.
    Note: J. Hagedorn and J. Devaney are Active Participants of the Message Passing Interface Forum, and NIST is a Supporting Institution of the MPI Forum.

 

1997

  • J. Devaney, Equation Discovery Through Global Self Referential Geometric Invariants and Machine Learning, Ph.D. Dissertation, George Mason University, December 1997.

  • J. Koontz, R. McCormack, J. Devaney and R. Lipman, WebSubmit: A Paradigm for Platform Independent Computing, invited talk delivered at Workshop on Seamless Computing, ECMWF, Reading, England, September 1997.

  • N. Martys and J. Hagedorn, Numerical Simulation of Fluid Transport in Complex Geometries delivered at International Conference on Computational Physics, American Physical Society, 1997.  

  • J. Devaney, M. Michel, J. Peeters and E. Baland, AutoMap : A Data Structures Compiler for the Automatic Generation of MPI Data Structures Directly From C Code, Internal Report, April 1997.

 

1996

  • R. Lipman and J. E. Devaney, WebSubmit: Running Supercomputer Applications Via the WEB, poster presented at Supercomputing 96, Pittsburgh, PA, November 1996.

  • K. H. J. Vrielink, E. C. Baland and J. E. Devaney, AutoLink: An MPI Library for Sending and Receiving Dynamic Data Structures, poster presented at International Conference on Parallel Computing, University of Minnesota Supercomputer Institute, October 1996.

  • J. Devaney, Parallel Universes, Perpendicular Thinking, Insight, and Everything, invited talk delivered at Naval Research Laboratory Workshop on Parallel Computing, 1996.